Ok I have this car back today for a better look.
2004 AVB engine. 102k on the clocks but 117k according to the mileage checker in VCDS

Owner says the stutter/misfire/whatever you want to call it will happen shortly after going onto the motorway while the cruise control is on at around 80mph.
I have taken it up and down the motorway twice. Once last night and once this morning and can't replicate the fault. I viewed all sorts of measuring blocks and can't see anything out of place. The engine starts and runs spot on. Power levels are good. No problems with driveshafts. No DMF issue that I can see.
Still no fault codes logged. I have attached an autoscan but it doesn't show a whole lot. The coolant temp sensor was replaced 2 weeks ago after the temp gauge was acting up so the error in instruments can be disregarded.
Fuel filter looks clean from what I can see looking through the hole in the top where the return line clips in.
I have an injector harness here but I am reluctant to fit it when there are no codes. It seems to me that any problem with the injector harness should show a fault code pretty much straight away. I have only fitted a few looms to these and they were all clear cut cases. Has anyone seen a loom cause this kind of issue? It seems unlikely to me that it would.
Has anybody got any suggestions for me? I am unsure how to proceed with this one really.
One thing that just occurred to me is do these suffer from any ECU relay problems like the Mk4 Golf? Do they use the same "109" relay?